Software Development Tools - BioPAX Wiki

Software Development Tools - BioPAX Wiki
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Protege [WWW] http://protege.stanford.edu/ - The defacto standard for editing OWL. Written using the Jena framework. Warning: Protege uses the [WWW] DIG protocol to communicate with a reasoner. DIG is not able to fully represent OWL-DL ontologies and so conclusions of the reasoner are suspect when warnings about unsupported constructs are given in the reasoner progress window in Protege.
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SWOOP [WWW] http://www.mindswap.org/2004/SWOOP/ - A lightweight browser of OWL documents written using the OWL API library. Much faster than Protege. See their page on [WWW] debugging using SWOOP
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SWeDE [WWW] http://owl-eclipse.projects.semwebcentral.org/ - The Semantic Web Development Environment is an extensible framework for integrating new and existing tools for the Semantic Web. The toolkit, built on the Eclipse IDE includes an OWL editor with helpful features like syntax highlighting, autocompletion, and error-detection. It also currently integrates existing tools like the OWL Validator, Kazuki (OWL to Java code generator), and DumpOnt (Ontology Visualizer)..
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[WWW] OWL Ontology HTML Presentation Service Drop in a URL of an OWL ontology and browse the ontology in html. Quick and Dirty.